# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) # ---------------------------------------------------------------------------- # If you submit this package back to Spack as a pull request, # please first remove this boilerplate and all FIXME comments. # # This is a template package file for Spack. We've put "FIXME" # next to all the things you'll want to change. Once you've handled # them, you can save this file and test your package like this: # # spack install dune # # You can edit this file again by typing: # # spack edit dune # # See the Spack documentation for more information on packaging. # ---------------------------------------------------------------------------- import os from pathlib import Path from spack import * class Dune(CMakePackage): """ DUNE, the Distributed and Unified Numerics Environment is a modular toolbox for solving partial differential equations (PDEs) with grid-based methods. """ homepage = "https://www.dune-project.org" git = "https://gitlab.dune-project.org/core/dune-common.git" # This defines a mapping of available versions of the dune Spack package # and the branch name in the Dune repositories this refers to. This is a # list instead of a dictionary to ensure iteration order (first entry is # the default version) in Python3. dune_versions_to_branch = [ ("2.9", "releases/2.9"), ("2.8", "releases/2.8"), ("2.7", "releases/2.7"), ("2.6", "releases/2.6"), ("master" , "master"), ] # This defines the mapping of the variant names for Dune modules and the # resource names that we assign later on. dune_variants_to_resources = { 'alugrid' : 'dune-alugrid', 'codegen' : 'dune-codegen', 'fem' : 'dune-fem', 'foamgrid' : 'dune-foamgrid', 'functions': 'dune-functions', 'gridglue' : 'dune-grid-glue', 'multidomaingrid' : 'dune-multidomaingrid', 'pdelab' : 'dune-pdelab', 'polygongrid' : 'dune-polygongrid', 'spgrid' : 'dune-spgrid', 'testtools' : 'dune-testtools', 'typetree' : 'dune-typetree', 'uggrid' : 'dune-uggrid', } # Define the inverse mapping dune_resources_to_variants = {v: k for k, v in dune_variants_to_resources.items()} # Dependencies between modules - not necessarily the full set # as the closure of module dependencies is built later on. # dune-common does not need to be named. dune_module_dependencies = { 'dune-alugrid': ['dune-grid'], 'dune-codegen': ['dune-pdelab', 'dune-testtools', 'dune-alugrid'], 'dune-fem': ['dune-grid'], 'dune-fempy': ['dune-fem'], 'dune-foamgrid': ['dune-grid'], 'dune-functions': ["dune-grid", "dune-typetree", "dune-localfunctions", "dune-istl"], 'dune-grid': ['dune-geometry'], 'dune-grid-glue': ['dune-grid'], 'dune-localfunctions': ['dune-geometry'], 'dune-multidomaingrid': ['dune-grid', 'dune-typetree'], 'dune-pdelab': ['dune-istl', 'dune-functions'], 'dune-polygongrid': ['dune-grid'], } # Build the closure of above module dependency list. # We need to use cryptic variable names here because # Spack behaves in weird ways if we accidentally use # names (like 'module') that are used in seemingly # unrelated places. for _mod in dune_module_dependencies: _closure = set(dune_module_dependencies[_mod]) _old_closure = set() while (len(_closure) > len(_old_closure)): _old_closure = _closure.copy() for _res in _old_closure: for _m in dune_module_dependencies.get(_res, []): _closure.add(_m) dune_module_dependencies[_mod] = list(_closure) # Variants for the general build process variant('shared', default=True, description='Enables the build of shared libraries.') # Some variants for customization of Dune variant('doc', default=False, description='Build and install documentation') variant('python', default=False, description='Build with Python bindings') # Variants for upstream dependencies. Note that we are exposing only very # costly upstream dependencies as variants. All other upstream dependencies # are installed unconditionally. This happens in an attempt to limit the total # number of variants of the dune package to a readable amount. An exception # to this rule is ParMETIS, which has a variant because of it's semi-free license. variant('parmetis', default=False, description='Build with ParMETIS support') variant('petsc', default=False, description='Build with PetSc support') variant('tbb', default=False, description='Build with Intel TBB support') # Define one variant for each non-core Dune module that we have. for var, res in dune_variants_to_resources.items(): variant(var, default=False, description='Build with the %s module' % res) # Define conflicts between Dune module variants. These conflicts are of the following type: # conflicts('dune~functions', when='+pdelab') -> dune-pdelab cannot be built without dune-functions for var, res in dune_variants_to_resources.items(): for dep in dune_module_dependencies.get(res, []): if dep in dune_resources_to_variants: conflicts('dune~%s' % dune_resources_to_variants[dep], when='+%s' % var) # Iterate over all available Dune versions and define resources for all Dune modules # If a Dune module behaves differently for different versions (e.g. dune-python got # merged into dune-common post-2.7), define the resource outside of this loop. for _vers, _branch in dune_versions_to_branch: version(_vers, branch=_branch) resource( name='dune-geometry', git='https://gitlab.dune-project.org/core/dune-geometry.git', branch=_branch, when='@%s' % _vers, ) resource( name='dune-grid', git='https://gitlab.dune-project.org/core/dune-grid.git', branch=_branch, when='@%s' % _vers, ) resource( name='dune-istl', git='https://gitlab.dune-project.org/core/dune-istl.git', branch=_branch, when='@%s' % _vers, ) resource( name='dune-localfunctions', git='https://gitlab.dune-project.org/core/dune-localfunctions.git', branch=_branch, when='@%s' % _vers, ) resource( name='dune-functions', git='https://gitlab.dune-project.org/staging/dune-functions.git', branch=_branch, when='@%s+functions' % _vers, ) resource( name='dune-typetree', git='https://gitlab.dune-project.org/staging/dune-typetree.git', branch=_branch, when='@%s+typetree' % _vers, ) resource( name='dune-alugrid', git='https://gitlab.dune-project.org/extensions/dune-alugrid.git', branch=_branch, when='@%s+alugrid' % _vers, ) resource( name='dune-uggrid', git='https://gitlab.dune-project.org/staging/dune-uggrid.git', branch=_branch, when='@%s+uggrid' % _vers, ) resource( name='dune-spgrid', git='https://gitlab.dune-project.org/extensions/dune-spgrid.git', branch=_branch, when='@%s+spgrid' % _vers, ) resource( name='dune-testtools', git='https://gitlab.dune-project.org/quality/dune-testtools.git', branch=_branch, when='@%s+testtools' % _vers, ) resource( name='dune-polygongrid', git='https://gitlab.dune-project.org/extensions/dune-polygongrid.git', branch=_branch, when='@%s+polygongrid' % _vers, ) resource( name='dune-foamgrid', git='https://gitlab.dune-project.org/extensions/dune-foamgrid.git', branch=_branch, when='@%s+foamgrid' % _vers, ) resource( name='dune-multidomaingrid', git='https://gitlab.dune-project.org/extensions/dune-multidomaingrid.git', branch=_branch, when='@%s+multidomaingrid' % _vers, ) resource( name='dune-fem', git='https://gitlab.dune-project.org/dune-fem/dune-fem.git', branch=_branch, when='@%s+fem' % _vers, ) resource( name='dune-fempy', git='https://gitlab.dune-project.org/dune-fem/dune-fempy.git', branch=_branch, when='@%s+fem+python' % _vers, ) resource( name='dune-pdelab', git='https://gitlab.dune-project.org/pdelab/dune-pdelab.git', branch=_branch, when='@%s+pdelab' % _vers, ) # The dune-grid-glue package does not yet have a 2.7-compatible release resource( name='dune-grid-glue', git='https://gitlab.dune-project.org/extensions/dune-grid-glue.git', branch=_branch, when='@%s+gridglue' % _vers, ) # The dune-python package migrated to dune-common after the 2.7 release resource( name='dune-python', git='https://gitlab.dune-project.org/staging/dune-python.git', branch='releases/2.7', when='@2.7+python', ) resource( name='dune-python', git='https://gitlab.dune-project.org/staging/dune-python.git', branch='releases/2.6', when='@2.6+python', ) # The dune-codegen package does not have a 2.6-compatible release resource( name='dune-codegen', git='https://gitlab.dune-project.org/extensions/dune-codegen.git', branch='master', when='@master+codegen', submodules=True, ) resource( name='dune-codegen', git='https://gitlab.dune-project.org/extensions/dune-codegen.git', branch='releases/2.7', when='@2.7+codegen', submodules=True, ) conflicts('dune@2.6', when='+codegen') # Make sure that Python components integrate well into Spack extends('python') python_components = [ 'dune' ] # Specify upstream dependencies (often depending on variants) depends_on('amgx', when='+fem+petsc') depends_on('arpack-ng') depends_on('benchmark', when='+codegen') depends_on('blas') depends_on('cmake@3.1:', type='build') depends_on('eigen', when='+fem') depends_on('eigen', when='+pdelab') depends_on('papi', when='+fem') depends_on('doxygen', type='build', when='+doc') depends_on('gawk') depends_on('gmp') depends_on('intel-tbb', when='+tbb') depends_on('lapack') # depends_on('likwid', when='+codegen') likwid cannot be built in spack v0.14.2 due to the lua dependency being broken depends_on('mpi') depends_on('parmetis', when='+parmetis') depends_on('petsc', when='+petsc') depends_on('pkg-config', type='build') depends_on('python@3.0:', type=('build', 'run')) depends_on('py-setuptools', type='build', when='+python') depends_on('py-numpy', type=('build', 'run'), when='+python') depends_on('py-pip', type=('build', 'run')) depends_on('py-sphinx', type=('build', 'run'), when='+doc') depends_on('py-wheel', type='build') depends_on('scotch+mpi') depends_on('suite-sparse') depends_on('superlu') depends_on('vc') depends_on('zlib', when='+alugrid') depends_on('zoltan', when='+alugrid') # Apply patches patch('virtualenv_from_envvariable.patch', when='+testtools') patch('pdelab_2.6_update_cmake.patch', when='@2.6+pdelab', working_dir= 'dune-pdelab') def setup_build_environment(self, env): # We reset the DUNE_CONTROL_PATH here because any entries in this # path that contain Dune modules will break the Spack build process. env.set('DUNE_CONTROL_PATH', '') def setup_run_environment(self, env): # Some scripts search the DUNE_CONTROL_PATH for Dune modules (e.g. duneproject). # We need to set it correctly in order to allow multiple simultaneous # installations of the dune package. env.set('DUNE_CONTROL_PATH', self.prefix) # Additionally, we need to set the workspace for the Python bindings to something # that is unique to this build of the dune module (it defaults to ~/.cache) if '+python' in self.spec: env.set('DUNE_PY_DIR', join_path(Path.home(), '.cache', 'dune-py', self.spec.dag_hash())) # For those modules that typically work with the Dune Virtualenv, # we export the location of the virtualenv as an environment variable. if '+testtools' in self.spec: env.set('DUNE_PYTHON_VIRTUALENV_PATH', join_path(Path.home(), '.cache', 'dune-python-env', self.spec.dag_hash())) def cmake_args(self): """Populate cmake arguments.""" spec = self.spec def variant_bool(feature, on='ON', off='OFF'): """Ternary for spec variant to ON/OFF string""" if feature in spec: return on return off def nvariant_bool(feature): """Negated ternary for spec variant to OFF/ON string""" return variant_bool(feature, on='OFF', off='ON') cmake_args = [ '-DCMAKE_BUILD_TYPE:STRING=%s' % self.spec.variants['build_type'].value, '-DBUILD_SHARED_LIBS:BOOL=%s' % variant_bool('+shared'), '-DDUNE_GRID_GRIDTYPE_SELECTOR:BOOL=ON', '-DCMAKE_DISABLE_FIND_PACKAGE_Doxygen:BOOL=%s' % nvariant_bool('+doc'), '-DCMAKE_DISABLE_FIND_PACKAGE_LATEX:BOOL=%s' % nvariant_bool('+doc'), '-DCMAKE_DISABLE_FIND_PACKAGE_ParMETIS:BOOL=%s' % nvariant_bool('+parmetis'), # '-DCMAKE_DISABLE_FIND_PACKAGE_TBB=%s' % nvariant_bool('+tbb'), Disabled until upstream fix of dune-common#205. ] if '+testtools' in spec: cmake_args.append('-DDUNE_PYTHON_VIRTUALENV_SETUP:BOOL=ON') cmake_args.append('-DDUNE_PYTHON_ALLOW_GET_PIP:BOOL=ON') cmake_args.append('-DDUNE_PYTHON_VIRTUALENV_PATH:STRING="%s"' % join_path(Path.home(), '.cache', 'dune-python-env', self.spec.dag_hash())) cmake_args.append('-DDUNE_PYTHON_INSTALL_LOCATION:STRING="system"') if '+python' in spec: if '@2.7' not in spec: cmake_args.append('-DDUNE_ENABLE_PYTHONBINDINGS:BOOL=TRUE') cmake_args.append('-DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE') cmake_args.append('-DDUNE_PYTHON_INSTALL_LOCATION:STRING="system"') return cmake_args def cmake(self, spec, prefix): # dune-codegen delivers its own set of patches for its submodules # that we can apply with a script delivered by dune-codegen. if '+codegen' in self.spec: with working_dir(join_path(self.root_cmakelists_dir, 'dune-codegen')): Executable('patches/apply_patches.sh')() # Write an opts file for later use with open(join_path(self.stage.source_path, "..", "dune.opts"), "w") as optFile: optFile.write('CMAKE_FLAGS="') for flag in self.cmake_args(): optFile.write(flag.replace("\"", "'")+" ") optFile.write('-DCMAKE_INSTALL_PREFIX=%s' % prefix) optFile.write('"') installer = Executable('bin/dunecontrol') options_file = join_path(self.stage.source_path, "..", "dune.opts") # The 'cmake' command of dunecontrol was added in 2.7 commandname = 'cmake' if '@2.6' in self.spec: commandname = 'configure' installer('--builddir=%s'%self.build_directory , '--opts=%s' % options_file, commandname) def install(self, spec, prefix): installer = Executable('bin/dunecontrol') options_file = join_path(self.stage.source_path, "..", "dune.opts") installer('--builddir=%s'%self.build_directory , '--opts=%s' % options_file, 'make', 'install') def build(self, spec, prefix): installer = Executable('bin/dunecontrol') options_file = join_path(self.stage.source_path, "..", "dune.opts") installer('--builddir=%s'%self.build_directory , '--opts=%s' % options_file, 'make')