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dune-spack/packages/dune/package.py

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# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# ----------------------------------------------------------------------------
# If you submit this package back to Spack as a pull request,
# please first remove this boilerplate and all FIXME comments.
#
# This is a template package file for Spack. We've put "FIXME"
# next to all the things you'll want to change. Once you've handled
# them, you can save this file and test your package like this:
#
# spack install dune
#
# You can edit this file again by typing:
#
# spack edit dune
#
# See the Spack documentation for more information on packaging.
# ----------------------------------------------------------------------------
import os
from spack import *
class Dune(CMakePackage):
"""
DUNE, the Distributed and Unified Numerics Environment is a modular toolbox for solving partial differential equations (PDEs) with grid-based methods.
"""
homepage = "https://www.dune-project.org"
git = "https://gitlab.dune-project.org/core/dune-common.git"
python_components = [ 'dune' ]
# This defines a mapping of available versions of the dune Spack package
# and the branch name in the Dune repositories this refers to.
dune_versions_to_branch = {
"master" : "master",
"2.7" : "releases/2.7",
}
variant('2d', default=True, description='Build library for 2d')
variant('3d', default=True, description='Build library for 3d')
variant('alberta', default=False, description='Build with Alberta support')
variant('amiramesh', default=False, description='Build with AmiraMesh support')
variant('arpack', default=True, description='Build ARnoldi PACKage library support')
variant('blas', default=True, description='Build with BLAS support')
variant('doxygen', default=True, description='Create Doxygen documentation')
variant('extrautils', default=True, description='Enable compilation and installation of extra utilities from the src subdirectory')
variant('fempy', default=False, description='Support of dune-fempy module')
variant('gmp', default=True, description='Build with GNU multi-precision library support')
variant('imagemagick', default=False, description='Imagemagick support')
variant('jupyter', default=False, description='Build with Jupyter support')
variant('lapack', default=True, description='Build with LAPACK support')
variant('metis', default=True, description='Build with METIS library support')
variant('mkl', default=True, description='Build with Math Kernel library support')
variant('tbb', default=True, description='Build with Threading Building Blocks library support')
variant('oldcategory', default=True, description='Enable/Disable the backwards compatibility of the category enum/method in dune-istl solvers, preconditioner, etc.')
variant('parmetis', default=True, description='Build with ParMETIS support')
variant('psurface', default=False, description='Build with Psurface support')
variant('ptscotch', default=True, description='Build with PT-Scotch support')
variant('selector', default=True, description='Grid selector definition added to config.h')
variant('shared', default=True, description='Enables the build of shared libraries.')
variant('sionlib', default=False, description='Build with SIONlib support')
variant('sphinx', default=True, description='Create Sphinx documentation')
variant('suitesparse', default=True, description='Build SuiteSparse library support')
variant('superlu', default=True, description='Build Supernodal LU library support')
variant('threads', default=True, description='Activate pThread support')
variant('vc', default=True, description='Build C++ Vectorization library support')
variant('zlib', default=True, description='Build zlib library support')
variant('zoltan', default=True, description='Build with Zoltan support')
variant('alugrid', default=False, description='Build with dune-alugrid module')
variant('corepy', default=False, description='Build with dune-corepy module')
variant('functions', default=False, description='Build with dune-functions module')
variant('geometry', default=False, description='Build with dune-geometry module')
variant('grid', default=False, description='Build with dune-grid module')
variant('istl', default=False, description='Build with dune-istl module')
variant('localfunctions', default=False, description='Build with dune-localfunctions module')
variant('python', default=False, description='Build with Python and dune-python')
variant('spgrid', default=False, description='Build with dune-spgrid module')
variant('typetree', default=False, description='Build with dune-typetree module')
variant('uggrid', default=False, description='Build with dune-uggrid module')
# Iterate over all available Dune versions and define resources for all Dune modules
for vers, branch in dune_versions_to_branch.items():
version(vers, branch=dune_versions_to_branch[vers])
resource(
name='dune-geometry',
git='https://gitlab.dune-project.org/core/dune-geometry.git',
branch=branch,
when='@%s+geometry' % vers,
)
resource(
name='dune-grid',
git='https://gitlab.dune-project.org/core/dune-grid.git',
branch=branch,
when='@%s+grid' % vers,
)
resource(
name='dune-istl',
git='https://gitlab.dune-project.org/core/dune-istl.git',
branch=branch,
when='@%s+istl' % vers,
)
resource(
name='dune-localfunctions',
git='https://gitlab.dune-project.org/core/dune-localfunctions.git',
branch=branch,
when='@%s+localfunctions' % vers,
)
resource(
name='dune-functions',
git='https://gitlab.dune-project.org/staging/dune-functions.git',
branch=branch,
when='@%s+functions' % vers,
)
resource(
name='dune-python',
git='https://gitlab.dune-project.org/staging/dune-python.git',
branch=branch,
when='@%s+python' % vers,
)
resource(
name='dune-typetree',
git='https://gitlab.dune-project.org/staging/dune-typetree.git',
branch=branch,
when='@%s+typetree' % vers,
)
resource(
name='dune-alugrid',
git='https://gitlab.dune-project.org/extensions/dune-alugrid.git',
branch=branch,
when='@%s+alugrid' % vers,
)
resource(
name='dune-uggrid',
git='https://gitlab.dune-project.org/staging/dune-uggrid.git',
branch='releases/2.7',
when='@%s+uggrid' % vers,
)
# Dependencies between modules
module_dependencies={"dune-common":[]}
module_dependencies["dune-geometry"]=["dune-common"]
module_dependencies["dune-grid"]=["dune-common","dune-geometry"]
module_dependencies["dune-uggrid"]=["dune-common"]
module_dependencies["dune-istl"]=["dune-common"]
module_dependencies["dune-localfunctions"]=["dune-common","dune-geometry"]
module_dependencies["dune-functions"]=["dune-grid","dune-typetree","dune-localfunctions","dune-istl"]
module_dependencies["dune-typetree"]=["dune-common"]
module_dependencies["dune-python"]=[]
module_dependencies["dune-alugrid"]=["dune-grid","dune-geometry","dune-common"]
extends('python')
#option
depends_on('gawk')
depends_on('cmake@3.1:', type='build')
depends_on('mpi')
depends_on('blas', when='+blas')
depends_on('lapack', when='+lapack')
depends_on('doxygen', type='build', when='+doxygen')
depends_on('gmp', when='+gmp')
depends_on('intel-tbb', when='+tbb')
depends_on('intel-mkl', when='+mkl')
depends_on('python@3.0:', type=('build', 'run'), when='+python')
depends_on('py-setuptools', type='build')
depends_on('py-jupyter', type=('build', 'run'), when='+jupyter')
depends_on('py-numpy', type=('build', 'run'), when='+python')
depends_on('py-pip', type=('build', 'run'), when='+python')
depends_on('py-sphinx', type=('build', 'run'), when='+sphinx')
depends_on('vc', when='+vc')
depends_on('pkg-config', type='build')
depends_on('imagemagick', type='build', when='+imagemagick')
depends_on('metis', when='+metis')
depends_on('parmetis', when='+parmetis')
depends_on('arpack-ng', when='+arpack')
depends_on('suite-sparse', when='+suitesparse')
depends_on('superlu', when='+superlu')
depends_on('alberta', when='+alberta')
depends_on('psurface', when='+psurface')
depends_on('amiramesh', when='+amiramesh')
depends_on('sionlib', when='+sionlib')
depends_on('zlib', when='+zlib')
depends_on('scotch+mpi', when='+ptscotch')
depends_on('zoltan', when='+zoltan')
def url_for_version(self, version):
url = "https://www.dune-project.org/download/{1}/dune-common-{1}.tar.gz"
return url.format(version.up_to(2), version)
def cmake_args(self):
"""Populate cmake arguments."""
spec = self.spec
def variant_bool(feature, on='ON', off='OFF'):
"""Ternary for spec variant to ON/OFF string"""
if feature in spec:
return on
return off
def nvariant_bool(feature):
"""Negated ternary for spec variant to OFF/ON string"""
return variant_bool(feature, on='OFF', off='ON')
cmake_args = [
# '-DDUNE_BUILD_BOTH_LIBS=%s' % variant_bool('+shared'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % variant_bool('+shared'),
'-DDUNE_GRID_EXTRA_UTILS:BOOL=%s' % variant_bool('+extrautils'),
'-DDUNE_GRID_GRIDTYPE_SELECTOR:BOOL=%s' % variant_bool('+selector'),
'-DDUNE_ISTL_SUPPORT_OLD_CATEGORY=%s' % variant_bool('+oldcategory'),
'-DUSE_PTHREADS:BOOL=%s' % variant_bool('+threads'),
]
#self.define_from_variant('DETECT_HDF5', 'hdf5'),
if '+python' in spec:
cmake_args.append('-DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE')
cmake_args.append('-DPYTHON_INSTALL_LOCATION:STRING="system"')
return cmake_args
def module_dependency_closure(self, when, reslist):
# Get a list of all modules that share the version requirement
all_resources = []
for w, rl in self.resources.items():
if w.version == when.version:
all_resources.extend(rl)
# And build the closure of modules from the given reslist
closure = set(reslist)
old_closure = set()
while (len(closure) > len(old_closure)):
old_closure = closure.copy()
for res in old_closure:
for mod in self.module_dependencies.get(res.name, []):
for r in all_resources:
if r.name == mod:
closure.add(r)
return list(closure)
def _get_needed_resources(self):
# Modify the list of resources by building a transitive closure of Dune module dependencies.
self.resources = {when: self.module_dependency_closure(when, reslist) for when, reslist in self.resources.items()}
# and call the original implementation
return CMakePackage._get_needed_resources(self)
def cmake(self, spec, prefix):
if self.stage.archive_file:
os.remove(self.stage.archive_file)
optFile = open(join_path(self.stage.source_path, "..", "dune.opts"), "w")
optFile.write('CMAKE_FLAGS="')
for flag in self.cmake_args():
optFile.write(flag.replace("\"", "'")+" ")
optFile.write('-DCMAKE_INSTALL_PREFIX=%s' % prefix)
optFile.write('"')
optFile.close()
set_executable('bin/dunecontrol')
installer = Executable('bin/dunecontrol')
options_file = join_path(self.stage.source_path, "..", "dune.opts")
installer('--builddir=%s'%self.build_directory , '--opts=%s' % options_file, 'cmake')
pass
def install(self, spec, prefix):
set_executable('bin/dunecontrol')
installer = Executable('bin/dunecontrol')
options_file = join_path(self.stage.source_path, "..", "dune.opts")
installer('--builddir=%s'%self.build_directory , '--opts=%s' % options_file, 'make', 'install')
pass
def build(self, spec, prefix):
set_executable('bin/dunecontrol')
installer = Executable('bin/dunecontrol')
options_file = join_path(self.stage.source_path, "..", "dune.opts")
installer('--builddir=%s'%self.build_directory , '--opts=%s' % options_file, 'make')
pass
@run_after('install')
def install_python_components(self):
if '+python' in self.spec:
for package in self.python_components:
build_directory = 'dune-python/python'
with working_dir(join_path(self.build_directory,'dune-python/python')):
setup_py('install', '--prefix={0}'.format(self.prefix))
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